Before selecting a suitable column, a number of fundamental questions should first be clarified.
1. What is the polarity of the analyte, and which solvents are suitable for it?
For highly polar biomolecules, such as proteins or antibodies, purely aqueous buffers are often used as eluents. Silica gel has proven to be a suitable base material for this purpose. For polar to moderately polar polymers, aqueous or polar organic eluents, or mixtures of both, are used. The base material is often polymethacrylate or polyvinyl alcohol. For non-polar polymers, for the analysis of which purely organic eluents are used, styrene-divinylbenzene copolymers (PS/DVB) are usually employed as stationary phases.
2. What is the molecular weight of my analyte?
The molecular weight of the analyte, or its size in the solvent, determines the pore size of the stationary phase. The absolute pore sizes range from approximately 25 to 30,000 Å, covering a molecular weight range of approximately 100 to > 20,000,000 daltons. For samples with widely varying molecular masses, either several columns with different pore sizes can be connected in series, or columns containing particles of different pore sizes can be used. These are often labelled ‘linear’, ‘mixed-gel’ or ‘multipore-gel’.
In many cases, suitable pore widths can be determined without difficulty using the manufacturers’ calibration data, which is usually very comprehensive.